publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2023

  1. Predicting Thrombectomy Recanalization from CT Imaging Using Deep Learning Models
    Haoyue Zhang, Jennifer S Polson, Eric J Yang, and 3 more authors
    arXiv preprint arXiv:2302.04143, 2023
  2. A Multitask Approach for Automated Detection and Segmentation of Thyroid Nodules in Ultrasound Images
    Ashwath Radhachandran, Adam Kinzel, Joseph Chen, and 5 more authors
    medRxiv, 2023
  3. Institutional strategies to maintain and grow imaging research during the COVID-19 pandemic
    Mai-Lan Ho, Corey W Arnold, Summer J Decker, and 3 more authors
    Academic radiology, 2023
  4. Multi-site, Multi-domain Airway Tree Modeling (ATM’22): A Public Benchmark for Pulmonary Airway Segmentation
    Minghui Zhang, Yangqian Wu, Hanxiao Zhang, and 8 more authors
    arXiv preprint arXiv:2303.05745, 2023
  5. Federated learning with research prototypes: application to multi-center MRI-based detection of prostate cancer with diverse histopathology
    Abhejit Rajagopal, Ekaterina Redekop, Anil Kemisetti, and 6 more authors
    Academic Radiology, 2023
  6. Multi-site, Multi-domain Airway Tree Modeling (ATM’22): A Public Benchmark for Pulmonary Airway Segmentation (preprint)
    Minghui Zhang, Yangqian Wu, Hanxiao Zhang, and 8 more authors
    2023
  7. Machine Learning Approaches to Classify Self-Reported Rheumatoid Arthritis Health Scores Using Activity Tracker Data: Longitudinal Observational Study
    Kaushal Rao, William Speier, Yiwen Meng, and 8 more authors
    JMIR Formative Research, 2023
  8. Pretrained Transformers for Seizure Detection
    Saarang Panchavati, Samuel Vander Dussen, Hemal Semwal, and 5 more authors
    In ICASSP 2023-2023 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 2023
  9. Multi-site, Multi-domain Airway Tree Modeling
    Minghui Zhanga, Yangqian Wua, Hanxiao Zhanga, and 8 more authors
    2023
  10. SLIViT: a general AI framework for clinical-feature diagnosis from limited 3D biomedical-imaging data
    Oren Avram, Berkin Durmus, Nadav Rakocz, and 8 more authors
    2023

2022

  1. Synthesizing MR image contrast enhancement using 3D high-resolution ConvNets
    Chao Chen, Catalina Raymond, William Speier, and 5 more authors
    IEEE Transactions on Biomedical Engineering, 2022
  2. High resolution histopathology image generation and segmentation through adversarial training
    Wenyuan Li, Jiayun Li, Jennifer Polson, and 3 more authors
    Medical Image Analysis, 2022
  3. Attention-guided prostate lesion localization and grade group classification with multiple instance learning
    Ekaterina Redekop, Karthik V Sarma, Adam Kinnaird, and 5 more authors
    In International Conference on Medical Imaging with Deep Learning, 2022
  4. Electronic Health Record–Integrated Tumor Board Application to Save Preparation Time and Reduce Errors
    Alex Nobori, Chayanit Jumniensuk, Xiang Chen, and 4 more authors
    JCO Clinical Cancer Informatics, 2022
  5. Artificial intelligence for diagnosis and Gleason grading of prostate cancer: the PANDA challenge
    Wouter Bulten, Kimmo Kartasalo, Po-Hsuan Cameron Chen, and 8 more authors
    Nature medicine, 2022
  6. Knowledge source rankings for semi-supervised topic modeling
    Justin Wood, Corey Arnold, and Wei Wang
    Information, 2022
  7. Deep Learning Approaches to Identify Patients within the Thrombolytic Treatment Window
    Jennifer S Polson, Haoyue Zhang, Kambiz Nael, and 8 more authors
    medRxiv, 2022
  8. Graph convolutional networks for multi-modality medical imaging: Methods, architectures, and clinical applications
    Kexin Ding, Mu Zhou, Zichen Wang, and 4 more authors
    arXiv preprint arXiv:2202.08916, 2022
  9. RPLHR-CT dataset and transformer baseline for volumetric super-resolution from CT scans
    Pengxin Yu, Haoyue Zhang, Han Kang, and 3 more authors
    In International Conference on Medical Image Computing and Computer-Assisted Intervention, 2022
  10. Transformer Lesion Tracker
    Wen Tang, Han Kang, Haoyue Zhang, and 3 more authors
    In International Conference on Medical Image Computing and Computer-Assisted Intervention, 2022
  11. Federated Learning with Research Prototypes for Multi-Center MRI-based Detection of Prostate Cancer with Diverse Histopathology
    Abhejit Rajagopal, Ekaterina Redekop, Anil Kemisetti, and 5 more authors
    arXiv preprint arXiv:2206.05617, 2022
  12. Comparing P300 flashing paradigms in online typing with language models
    Nand Chandravadia, Shrita Pendekanti, Dustin Roberts, and 5 more authors
    medRxiv, 2022
  13. A Bayesian Topic Model for Human-Evaluated Interpretability
    Justin Wood, Corey Arnold, and Wei Wang
    In Proceedings of the Thirteenth Language Resources and Evaluation Conference, 2022
  14. Identifying acute ischemic stroke patients within the thrombolytic treatment window using deep learning
    Jennifer S Polson, Haoyue Zhang, Kambiz Nael, and 8 more authors
    Journal of Neuroimaging, 2022
  15. MobileNetV2 Based Diagnosis and Grading of Limbal Stem Cell Deficiency
    Patrick Liu, Saarang Panchavati, Mara Pleasure, and 5 more authors
    In 2022 IEEE 22nd International Conference on Bioinformatics and Bioengineering (BIBE), 2022
  16. Automated estimation of ischemic core volume on noncontrast-enhanced CT via machine learning
    Iris E Chen, Brian Tsui, Haoyue Zhang, and 8 more authors
    Interventional Neuroradiology, 2022

2021

  1. Attention-guided discriminative region localization and label distribution learning for bone age assessment
    Chao Chen, Zhihong Chen, Xinyu Jin, and 3 more authors
    IEEE Journal of Biomedical and Health Informatics, 2021
  2. Classifying breast histopathology images with a ductal instance-oriented pipeline
    Beibin Li, Ezgi Mercan, Sachin Mehta, and 5 more authors
    In 2020 25th International Conference on Pattern Recognition (ICPR), 2021
  3. Multi-level embedding with topic modeling on electronic health records for predicting depression
    Yiwen Meng, William Speier, Michael Ong, and 1 more author
    Explainable AI in Healthcare and Medicine: Building a Culture of Transparency and Accountability, 2021
  4. A multi-resolution model for histopathology image classification and localization with multiple instance learning
    Jiayun Li, Wenyuan Li, Anthony Sisk, and 4 more authors
    Computers in biology and medicine, 2021
  5. Intra-domain task-adaptive transfer learning to determine acute ischemic stroke onset time
    Haoyue Zhang, Jennifer S Polson, Kambiz Nael, and 6 more authors
    Computerized Medical Imaging and Graphics, 2021
  6. Federated learning improves site performance in multicenter deep learning without data sharing
    Karthik V Sarma, Stephanie Harmon, Thomas Sanford, and 8 more authors
    Journal of the American Medical Informatics Association, 2021
  7. Bidirectional representation learning from transformers using multimodal electronic health record data to predict depression
    Yiwen Meng, William Speier, Michael K Ong, and 1 more author
    IEEE Journal of Biomedical and Health Informatics, 2021
  8. The Use of a Novel Digital Tumor Board Platform Reduces Pathologist Tumor Board Preparation Time and Enhances Clinician Satisfaction: the UCLA Experience
    Alexander Nobori, Chayanit Jumniensuk, Shawn Chen, and 3 more authors
    In LABORATORY INVESTIGATION, 2021
  9. Optimizing spatial biopsy sampling for the detection of prostate cancer
    Alex G Raman, Karthik V Sarma, Steven S Raman, and 8 more authors
    The Journal of urology, 2021
  10. On the Utility of Combining Topic Models and Recurrent Neural Networks
    Justin Wood, Bohan Li, Jae Lee, and 2 more authors
    In International Conference on Computing and Information Technology, 2021
  11. Harnessing clinical annotations to improve deep learning performance in prostate segmentation
    Karthik V Sarma, Alex G Raman, Nikhil J Dhinagar, and 8 more authors
    Plos one, 2021
  12. A machine learning approach to predict acute ischemic stroke thrombectomy reperfusion using discriminative mr image features
    Haoyue Zhang, Jennifer Polson, Kambiz Nael, and 4 more authors
    In 2021 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI), 2021
  13. The biased coin flip process for nonparametric topic modeling
    Justin Wood, Wei Wang, and Corey Arnold
    In Document Analysis and Recognition–ICDAR 2021: 16th International Conference, Lausanne, Switzerland, September 5–10, 2021, Proceedings, Part II 16, 2021
  14. Hierarchical graph pathomic network for progression free survival prediction
    Zichen Wang, Jiayun Li, Zhufeng Pan, and 5 more authors
    In Medical Image Computing and Computer Assisted Intervention–MICCAI 2021: 24th International Conference, Strasbourg, France, September 27–October 1, 2021, Proceedings, Part VIII 24, 2021
  15. A Semi-Supervised Learning Framework to Leverage Proxy Information for Stroke MRI Analysis
    Jennifer Polson, Haoyue Zhang, Kambiz Nael, and 6 more authors
    In 2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 2021
  16. Pathal: An active learning framework for histopathology image analysis
    Wenyuan Li, Jiayun Li, Zichen Wang, and 5 more authors
    IEEE Transactions on Medical Imaging, 2021
  17. Automatic Estimation of Limbal Stem Cell Densities in Cultured Epithelial Cell Microscopy Imaging
    Nathan Siu, Maxime Ruiz, Sheyla Gonzalez Garrido, and 8 more authors
    In 2021 IEEE 21st International Conference on Bioinformatics and Bioengineering (BIBE), 2021

2020

  1. Semi-supervised learning using adversarial training with good and bad samples
    Wenyuan Li, Zichen Wang, Yuguang Yue, and 4 more authors
    Machine Vision and Applications, 2020
  2. An electronic form for reporting results of targeted prostate biopsy: Urology Integrated Diagnostic Report (Uro-IDR)
    Jacob Guorgui, Adam Kinnaird, Rajiv Jayadevan, and 3 more authors
    Urology, 2020
  3. Radiology’s information architecture could migrate to one emulating that of smartphones
    Dieter R Enzmann, Corey W Arnold, Edward Zaragoza, and 2 more authors
    Journal of the American College of Radiology, 2020
  4. HCET: hierarchical clinical embedding with topic modeling on electronic health records for predicting future depression
    Yiwen Meng, William Speier, Michael Ong, and 1 more author
    IEEE journal of biomedical and health informatics, 2020
  5. Toward heterogeneous information fusion: bipartite graph convolutional networks for in silico drug repurposing
    Zichen Wang, Mu Zhou, and Corey Arnold
    Bioinformatics, 2020
  6. Integrating remote monitoring into heart failure patients’ care regimen: A pilot study
    Albert Sohn, William Speier, Esther Lan, and 4 more authors
    PloS one, 2020
  7. Biometric and psychometric remote monitoring and cardiovascular risk biomarkers in ischemic heart disease
    Chrisandra L Shufelt, Andy Kim, Sandy Joung, and 8 more authors
    Journal of the American Heart Association, 2020
  8. Image-based patch selection for deep learning to improve automated Gleason grading in histopathological slides
    William Speier, Jiayun Li, Wenyuan Li, and 2 more authors
    bioRxiv, 2020
  9. Bidirectional Representation Learning from Transformers using Multimodal Electronic Health Record Data for Chronic to Predict Depression.
    Yiwen Meng, William Speier, Michael K Ong, and 1 more author
    CoRR, 2020
  10. Optimizing P300 speller performance using language models for character and word prediction
    Nithin Parthasarathy, Corey Arnold, Nader Pouratian, and 1 more author
    In 2020 IEEE 20th International Conference on Bioinformatics and Bioengineering (BIBE), 2020
  11. Semi-automated PIRADS scoring via mpMRI analysis
    Nikhil J Dhinagar, William Speier, Karthik V Sarma, and 5 more authors
    Journal of Medical Imaging, 2020

2019

  1. Patient concerns and perceptions regarding biologic therapies in ankylosing spondylitis: insights from a Large-Scale survey of social media platforms
    Eldin Dzubur, Carine Khalil, Christopher V Almario, and 8 more authors
    Arthritis care & research, 2019
  2. A machine learning approach for classifying ischemic stroke onset time from imaging
    King Chung Ho, William Speier, Haoyue Zhang, and 3 more authors
    IEEE transactions on medical imaging, 2019
  3. Semi-supervised learning based on generative adversarial network: a comparison between good GAN and bad GAN approach.
    Wenyuan Li, Zichen Wang, Jiayun Li, and 3 more authors
    In CVPR Workshops, 2019
  4. Predicting ischemic stroke tissue fate using a deep convolutional neural network on source magnetic resonance perfusion images
    King Chung Ho, Fabien Scalzo, Karthik V Sarma, and 3 more authors
    Journal of Medical Imaging, 2019
  5. An attention-based multi-resolution model for prostate whole slide imageclassification and localization
    Jiayun Li, Wenyuan Li, Arkadiusz Gertych, and 3 more authors
    arXiv preprint arXiv:1905.13208, 2019
  6. A machine learning approach to classifying self-reported health status in a cohort of patients with heart disease using activity tracker data
    Yiwen Meng, William Speier, Chrisandra Shufelt, and 6 more authors
    IEEE journal of biomedical and health informatics, 2019
  7. Estimating the health-related quality of life of twitter users using semantic processing
    Karthik V Sarma, Brennan MR Spiegel, Mark W Reid, and 4 more authors
    Studies in health technology and informatics, 2019
  8. A protocol integrating remote patient monitoring patient reported outcomes and cardiovascular biomarkers
    Chrisandra Shufelt, Eldin Dzubur, Sandy Joung, and 8 more authors
    NPJ digital medicine, 2019
  9. LSTM network for prediction of hemorrhagic transformation in acute stroke
    Yannan Yu, Bhargav Parsi, William Speier, and 3 more authors
    In Medical Image Computing and Computer Assisted Intervention–MICCAI 2019: 22nd International Conference, Shenzhen, China, October 13–17, 2019, Proceedings, Part IV 22, 2019
  10. Assessment of heart failure patients’ interest in mobile health apps for self-care: survey study
    Albert Sohn, William Speier, Esther Lan, and 4 more authors
    JMIR cardio, 2019
  11. JMIR Cardio
    Albert Sohn, William Speier, Esther Lan, and 8 more authors
    JMIR, 2019

2018

  1. Improving P300 spelling rate using language models and predictive spelling
    William Speier, Corey Arnold, Nand Chandravadia, and 3 more authors
    Brain-Computer Interfaces, 2018
  2. Evaluating utility and compliance in a patient-based eHealth study using continuous-time heart rate and activity trackers
    William Speier, Eldin Dzubur, Mary Zide, and 7 more authors
    Journal of the American Medical Informatics Association, 2018
  3. Semantic segmentation for prostate cancer grading by convolutional neural networks
    Nathan Ing, Zhaoxuan Ma, Jiayun Li, and 4 more authors
    In Medical Imaging 2018: Digital Pathology, 2018
  4. An EM-based semi-supervised deep learning approach for semantic segmentation of histopathological images from radical prostatectomies
    Jiayun Li, William Speier, King Chung Ho, and 4 more authors
    Computerized Medical Imaging and Graphics, 2018
  5. Path R-CNN for prostate cancer diagnosis and gleason grading of histological images
    Wenyuan Li, Jiayun Li, Karthik V Sarma, and 5 more authors
    IEEE transactions on medical imaging, 2018
  6. Semi-supervised rare disease detection using generative adversarial network
    Wenyuan Li, Yunlong Wang, Yong Cai, and 3 more authors
    arXiv preprint arXiv:1812.00547, 2018
  7. Predicting Patient Health Status using Activity Tracker Data
    Yiwen Meng, William Speier, Eldin Dzubur, and 2 more authors
    In AMIA, 2018
  8. Prediction of Clinically Significant Prostate Cancer in MR/Ultrasound Guided Fusion Biopsy using Multiparametric MRI
    Wen Shi, Karthik V Sarma, Alex G Raman, and 6 more authors
    In Medical Imaging Meets NeurIPS Workshop, 2018

2017

  1. Source-LDA: Enhancing probabilistic topic models using prior knowledge sources
    Justin Wood, Patrick Tan, Wei Wang, and 1 more author
    In 2017 IEEE 33rd International Conference on Data Engineering (ICDE), 2017
  2. Patient Knowledge, Attitudes, and Beliefs Regarding Biologic Therapies in Ankylosing Spondylitis (AS): Insights from a Large-Scale Analysis of Social Media Platforms
    Deeba Minhas, Benjamin Noah, Eldin Dzubur, and 8 more authors
    In ARTHRITIS & RHEUMATOLOGY, 2017
  3. Classifying acute ischemic stroke onset time using deep imaging features
    King Chung Ho, William Speier, Suzie El-Saden, and 1 more author
    In AMIA Annual Symposium Proceedings, 2017
  4. A multi-scale u-net for semantic segmentation of histological images from radical prostatectomies
    Jiayun Li, Karthik V Sarma, King Chung Ho, and 3 more authors
    In AMIA Annual Symposium Proceedings, 2017

2016

  1. RadPath: A Web-based System for Integrating and Correlating Radiology and Pathology Findings During Cancer Diagnosis
    Corey W Arnold, W Dean Wallace, Shawn Chen, and 6 more authors
    Academic radiology, 2016
  2. Evaluating topic model interpretability from a primary care physician perspective
    Corey W Arnold, Andrea Oh, Shawn Chen, and 1 more author
    Computer methods and programs in biomedicine, 2016
  3. A data-driven approach for quality assessment of radiologic interpretations
    William Hsu, Simon X Han, Corey W Arnold, and 2 more authors
    Journal of the American Medical Informatics Association, 2016
  4. Abstract WP41: Predicting acute ischemic stroke tissue fate using deep learning on source perfusion MRI
    King Chung Ho, Suzie El-Saden, Fabien Scalzo, and 2 more authors
    Stroke, 2016
  5. Using phrases and document metadata to improve topic modeling of clinical reports
    William Speier, Michael K Ong, and Corey W Arnold
    Journal of Biomedical Informatics, 2016
  6. Integrating language models into classifiers for BCI communication: a review
    William Speier, C Arnold, and Nader Pouratian
    Journal of neural engineering, 2016
  7. Consumers’ patient portal preferences and health literacy: a survey using crowdsourcing
    Mary Zide, Kaitlyn Caswell, Ellen Peterson, and 3 more authors
    JMIR research protocols, 2016
  8. A temporal deep learning approach for MR perfusion parameter estimation in stroke
    King Chung Ho, Fabien Scalzo, Karthik V Sarma, and 2 more authors
    In 2016 23rd International Conference on Pattern Recognition (ICPR), 2016
  9. Content Summaries of the Selected Best Papers for the IMIA Yearbook 2017 in the “Sensor, Signal, and Imaging Informatics” Section
    CW Arnold, WD Wallace, S Chen, and 6 more authors
    Acad Radiol, 2016

2015

  1. Patient portal preferences: perspectives on imaging information
    Mary McNamara, Corey Arnold, Karthik Sarma, and 3 more authors
    Journal of the Association for Information Science and Technology, 2015
  2. Imaging–Histologic Discordance at Percutaneous Biopsy of the Lung
    Andrea S Oh, Corey W Arnold, Sitaram Vangala, and 4 more authors
    Academic radiology, 2015
  3. Incorporating advanced language models into the P300 speller using particle filtering
    W Speier, CW Arnold, A Deshpande, and 2 more authors
    Journal of neural engineering, 2015
  4. Balancing opioid-induced gastrointestinal side effects with pain management: Insights from the online community.
    Cynthia B Whitman, Mark W Reid, Corey Arnold, and 5 more authors
    Journal of opioid management, 2015

2014

  1. Integrating language information with a hidden Markov model to improve communication rate in the P300 speller
    William Speier, Corey Arnold, Jessica Lu, and 2 more authors
    IEEE Transactions on Neural Systems and Rehabilitation Engineering, 2014
  2. Data model for personalized patient health guidelines: an exploratory study
    Mary McNamara, Karthik Sarma, Denise R Aberle, and 2 more authors
    In AMIA Annual Symposium Proceedings, 2014
  3. Predicting discharge mortality after acute ischemic stroke using balanced data
    King Chung Ho, William Speier, Suzie El-Saden, and 4 more authors
    In AMIA Annual Symposium Proceedings, 2014
  4. Managing Opioid-Induced Constipation: Perceptions and Misconceptions From the Online Community: 2218
    Cynthia Whitman, Corey Arnold, Haridarshan Patel, and 4 more authors
    Official journal of the American College of Gastroenterology| ACG, 2014

2013

  1. Imaging informatics for consumer health: towards a radiology patient portal
    Corey W Arnold, Mary McNamara, Suzie El-Saden, and 3 more authors
    Journal of the American Medical Informatics Association, 2013
  2. Imaging-based observational databases for clinical problem solving: the role of informatics
    Alex AT Bui, William Hsu, Corey Arnold, and 3 more authors
    Journal of the American Medical Informatics Association, 2013
  3. BabySTEPS: a sugar tracking electronic portal system for gestational diabetes
    Corey W Arnold, Tina Nguyen, and Carla Janzen
    In MEDINFO 2013, 2013
  4. Unifying acute stroke treatment guidelines for a bayesian belief network
    Alexa Love, Corey W Arnold, Suzie El-Saden, and 4 more authors
    In MEDINFO 2013, 2013
  5. Hierarchical semantic structures for medical NLP.
    Ricky K Taira, and Corey W Arnold
    Studies in Health Technology and Informatics, 2013
  6. Evaluating true BCI communication rate through mutual information and language models
    William Speier, Corey Arnold, and Nader Pouratian
    PloS one, 2013
  7. Measuring Health Related Quality of Life (HRQoL) in Crohn’s Disease Using Twitter: A Pilot Study of Social Media As a Novel Tool to Assess Disease Burden
    Danielle E Strom, Victoria Sheen, Corey Arnold, and 2 more authors
    Gastroenterology, 2013

2012

  1. A topic model of clinical reports
    Corey Arnold, and William Speier
    In Proceedings of the 35th international ACM SIGIR conference on Research and development in information retrieval, 2012

2011

  1. Wireless data collection of self-administered surveys using tablet computers
    Kyle W Singleton, Mars Lan, Corey Arnold, and 4 more authors
    In AMIA Annual Symposium Proceedings, 2011
  2. Natural language processing with dynamic classification improves P300 speller accuracy and bit rate
    William Speier, Corey Arnold, Jessica Lu, and 2 more authors
    Journal of neural engineering, 2011
  3. Robust skull stripping of clinical glioblastoma multiforme data
    William Speier, Juan E Iglesias, Leila El-Kara, and 2 more authors
    In Medical Image Computing and Computer-Assisted Intervention–MICCAI 2011: 14th International Conference, Toronto, Canada, September 18-22, 2011, Proceedings, Part III 14, 2011

2010

  1. A neuro-oncology workstation for structuring, modeling, and visualizing patient records
    William Hsu, Corey W Arnold, and Ricky K Taira
    In Proceedings of the 1st ACM International Health Informatics Symposium, 2010
  2. Clinical case-based retrieval using latent topic analysis
    Corey W Arnold, Suzie M El-Saden, Alex AT Bui, and 1 more author
    In AMIA annual symposium proceedings, 2010

2007

  1. A prototype Web-based reporting system for onsite-offsite clinician communication
    Corey W Arnold, Alex AT Bui, Craig Morioka, and 2 more authors
    Radiographics, 2007